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Molecular phylogeny and morphology of four Ramularia species from Iran along with a checklist of ramularia-like taxa | ||
| Rostaniha | ||
| مقاله 2، دوره 19، شماره 2 - شماره پیاپی 56، اسفند 2018، صفحه 92-112 اصل مقاله (638.8 K) | ||
| نوع مقاله: Systematics and Biodiversity of Fungi | ||
| شناسه دیجیتال (DOI): 10.22092/botany.2019.124392.1133 | ||
| نویسنده | ||
| Mounes Bakhshi* | ||
| Department of Botany, Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization (AREEO), Tehran, Iran | ||
| چکیده | ||
| The genus Ramularia includes important plant pathogens with worldwide distribution, commonly associated with leaf spot diseases on a broad range of plant hosts. Although these fungi are common in Iran, most of the species found to date have been identified on the basis of morphological characteristics, and DNA data are available for limited number of them. During our investigation of fungi associated with leaf spot diseases in north and northwest of Iran, Ramularia isolates were recovered from leaves with leaf spots on different herbaceous and woody plants in the Asteraceae, Apiaceae, and Vitaceae families. Based on sequence data of five genomic loci (ITS, actA, tef1, rpb2 and gapdh), host, cultural and morphological data; four species including R. cynarae on Cirsium arvense,R. heraclei on Heracleum sp.,R. hydrangeae-macrophyllae on Vitis vinifera,and R. inaequalis on Taraxacum campylodes, were identified. Ramularia hydrangeae-macrophyllae represents a new record for the mycobiota of Iran as well as Asia, and V. vinifera is a new host for this species in the world. Moreover, C. arvense and T. campylodes are new hosts for R. cynarae and R. inaequalis in Iran,respectively. Additionally, a comprehensive literature-based checklist for 50 ramularia-like species known to occur on different plant species in Iran was provided. The complete annotated list covers 41 Ramularia species, two Cercosporella, two Neoovularia, two Neoramularia,one Microcyclosporella, one Neopseudocercosporella, and one Ramulariopsis. | ||
| کلیدواژه‌ها | ||
| Hyphomycetes؛ leaf spotting fungi؛ Mycosphaerella؛ phylogeny؛ Systematic | ||
| عنوان مقاله [English] | ||
| فیلوژنی مولکولی و ریخت‌شناسی چهار گونه رامولاریا از ایران به همراه فهرستی از آرایه‌های شبه‌رامولاریا | ||
| نویسندگان [English] | ||
| مونس بخشی | ||
| عضو هیئت علمی بخش تحقیقات رستنی‌ها، مؤسسه تحقیقات گیاه‌پزشکی کشور، سازمان تحقیقات، آموزش و ترویج کشاورزی، تهران، ایرا | ||
| چکیده [English] | ||
| جنس Ramularia بیمارگرهای گیاهی مهمی را شامل می‌شود که در سراسر جهان پراکنده‌اند و اغلب با علایم لکه‌برگی در دامنه گسترده‌ای از میزبان‌های گیاهی همراه هستند. با وجود پراکنش گسترده این قارچ‌ها در ایران، تاکنون بیشتر گونه‌ها براساس صفات ریخت‌شناختی شناسایی شده‌اند و توالی DNA برای تعداد بسیار اندکی از آن‌ها وجود دارد. طی مطالعه عوامل ایجاد لکه برگی روی گیاهان مختلف در نواحی شمال و شمال‌غرب کشور، جدایه‌هایی از جنس رامولاریا از برگ‌های دارای علایم لکه‌برگی میزبان‌های چوبی و علفی در تیره‌های Asteraceae، Apiaceae و Vitaceae به دست آمد. براساس ترکیب داده‌های توالی پنج ناحیه ژنی (ITS، actA، tef1، rpb2و gapdh)، اطلاعات میزبان و صفات ریخت‌شناختی، چهار گونه شامل: R. cynarae روی کنگر صحرایی (Cirsiumarvense)، R. heracleiروی گیاهHeracleum sp.، R. hydrangeae-macrophyllae روی انگور (Vitis vinifera) و R. inaequalisروی گیاه گل قاصد (Taraxacum campylodes) شناسایی شدند. این نخستین گزارش از وجود آرایه R. hydrangeae-macrophyllae برای میکوبیوتای ایران و همچنین قاره آسیا بوده و انگور به عنوان میزبان جدیدی برای این گونه در دنیا گزارش می‌شود. همچنین، کنگر صحرایی و گل قاصد به ترتیب به عنوان میزبان‌های جدیدی در ایران برای دو گونه R. cynarae و R. inaequalis هستند. علاوه‌بر‌این، در این پژوهش، فهرست کاملی از 50 گونه رامولاریا و جنس‌های مشابه که روی میزبان‌های مختلف در ایران گزارش شده‌اند، ارایه گردیده است. این فهرست دربردارنده 41 گونه از جنس رامولاریا، دو گونه از جنس Cercosporella، دو گونه از جنسNeoovularia، دو گونهNeoramularia،یک گونه Microcyclosporella، یک گونه Neopseudocercosporella و یک گونه Ramulariopsis می‌باشد. | ||
| کلیدواژه‌ها [English] | ||
| سیستماتیک, فیلوژنی, قارچ‌های عامل لکه‌برگی, میکوسفرلا, هیفومیست | ||
| مراجع | ||
|
Bakhshi, M., Arzanlou, M. & Babai-ahari, A. 2011. Uneven distribution of mating type alleles in Iranian populations of Cercospora beticola, the causal agent of Cercospora leaf spot disease of sugar beet. Phytopathologia Mediterranea 50(1): 101–109.
Bakhshi, M., Arzanlou, M., Babai-ahari, A., Groenewald, J.Z. & Crous, P.W. 2014.Multi-gene analysis of Pseudocercospora spp. from Iran. Phytotaxa 184(5): 245–264.
Bakhshi, M., Arzanlou, M., Babai-ahari, A., Groenewald, J.Z., Braun, U. & Crous, P.W. 2015. Application of the consolidated species concept to Cercospora spp. from Iran. Persoonia 34: 65–86.
Bakhshi, M. & Arzanlou, M. 2017. Multigene phylogeny reveals a new species and novel records and hosts in the genus Ramularia from Iran. Mycological Progress 16: 703–712.
Bakhshi, M., Arzanlou, M., Babai-ahari, A., Groenewald, J.Z. & Crous, P.W. 2018. Novel primers improve species delimitation in Cercospora. IMA Fungus 9(2): 299–332.
Behrooz, S.Y., Salari, M., Pirnia, M. & Sabbagh, S.K. 2015. Identification of Ramularia species on some medicinal plants in Kohgiluyeh and Boyerahmad province. Iranian Journal of Plant Protection Science 46: 113–117.
Behrooz, S.Y., Salari, M., Pirnia, M. & Sabbagh, S.K. 2017. New records of the genus Ramularia in Iran. Plant Pathology & Quarantine 7: 21–27.
Bensch, K., Braun, U., Groenewald, J.Z. & Crous, P.W. 2012. The genus Cladosporium. Studies in Mycology 72: 1–401.
Bicharanlou, B., Pirnia, M. & Asadi, G.H. 2014. New species of Passalora and Ramularia from Iran. Applied Entomology and Phytopathology 81(2): 191–194.
Braun, U. 1995. A monograph of Cercosporella, Ramularia and allied genera (phytopathogenic hyphomycetes): Vol. 1. IHW, Eching.
Braun, U. 1998. A monograph of Cercosporella, Ramularia and allied genera (phytopathogenic hyphomycetes): Vol. 2. IHW, Eching.
Carisse, O., Bourgeois, G. & Duthie, J.A. 2000. Influence of temperature and leaf wetness duration on infection of strawberry leaves by Mycosphaerella fragariae. Phythopathology 90: 1120–1125.
Crous, P.W., Summerell, B.A., Carnegie, A.J., Wingfield, M.J., Hunter, G.C., Burgess, T.I., Andjic, V., Barber, P.A. & Groenewald, J.Z. 2009a. Unravelling Mycosphaerella: do you believe in genera? Persoonia 23: 99–118.
Crous, P.W., Verkley, G.J.M., Groenewald, J.Z. & Samson, R.A. 2009b. Fungal Biodiversity. CBS Laboratory Manual Series 1: 1–269. Centraalbureau voor Schimmelcultures, Utrecht, Netherlands.
Crous, P.W., Summerell, B.A., Swart, L., Denman, S., Taylor, J.E., Bezuidenhout, C.M., Palm, M.E., Marincowitz, S. & Groenewald, J.Z. 2011. Fungal pathogens of Proteaceae. Persoonia 27: 20–45.
Crous, P.W., Braun, U., Hunter, G.C., Wingfield, M.J., Verkley, G.J.M., Shin, H.D., Nakashima, C. & Groenewald, J.Z.2013. Phylogenetic lineages in Pseudocercospora. Studies in Mycology 75: 37–114.
Ershad, D. 2009. Fungi of Iran. 3rd ed. Agricultural Research. Education & Extension Organization, Publication. No. 10, Tehran, 531 pp.
Farr, D.F. & Rossman, A.Y. 2018. Fungal Databases, Systematic Mycology and Microbiology Laboratory, ARS, USDA. Available from https://nt.ars-grin.gov/fungaldatabases.
Groenewald, J.Z., Nakashima, C., Nishikawa, J., Shin, H-D, Park, J.H., Jama, A.N., Groenewald, M., Braun, U. & Crous, P.W.2013. Species concepts in Cercospora: spotting the weeds among the roses. Studies in Mycology 75: 115–170.
Hawksworth, D.L. 2011. A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names. IMI Fungus 2(2): 155–162.
Heidari, A., Khodaparast, S.A. & Mousanejad, S. 2015. Fungi associated with apple and pear sooty blotch and flyspeck diseases in Guilan province, Iran. Mycologia Iranica 2(2): 119–126.
Heydari, N., Ghorbani, M., Salari, M., Panjehkeh, N. & Pirnia, M. 2017. New records of anamorphic fungi from North of Iran. Mycologia Iranica 4(1): 49–59.
Katoh, K. & Standley, D.M. 2013. MAFFT multiple sequence alignment software Ver. 7: improvements in performance and usability. Molecular Biology and Evolution 30(4): 772–780.
Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C. & Thierer, T. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28(12): 1647–1649.
Kirk, P.M., Stalpers, J.A., Braun, U., Crous, P.W., Hensen, K., Hawksworth, D.L., Hyde, K.D., Lücking, R., Lumbsch, T.H., Rossman, A.Y. & Seifert, K.A. 2013. A without-prejudice list of generic names of fungi for protection under the International Code of Nomenclature for Algae, Fungi, and Plants. IMA Fungus 4(2): 381–443.
Maddison, W.P. & Maddison, D.R. 2011. Mesquite: a modular system for evolutionary analysis. Version 2.75. http://mesquiteproject.org.
Mahilum-Tapy, L.M. 2009. The importance of microbial culture collection and gene banks in biotechnology. In: Doelle, H.W., Rokem, J.S. & Berovic, M. (eds). Biotechnology. Encyclopedia of Life Support Systems (EOLSS).
Möller, E.M., Bahnweg, G., Sandermann, H. & Geiger, H. 1992. A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues. Nucleic Acids Research 20(22): 6115–6116.
Norvel, L.L. 2011. Fungal nomenclature. 1. Melbourne approves a new Code. Mycotaxon 116(1): 481–490.
Nugenta, L.K., Sangvichenb, E., Sihanonthc, P., Ruchikachorn, N. & Whalley, A.J. 2006. A revised method for the observation of conidiogenous structures in fungi. Mycologist 20: 111–114.
Nylander, J.A.A. 2004. MrModeltest Ver. 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
Park, J. & Shin, H. 2016. Ramularia hydrangeicola sp. nov. with distinctive traits on Hydrangea serrata f. acuminata in Korea. Mycotaxon 131(1): 95–102.
Pirnia, M., Zare, R., Zamanizadeh, H.R. & Khodaparast, S.A. 2012. New records of cercosporoid hyphomycetes from Iran. Mycotaxon 120: 157–169.
Pirnia, M. & Braun, U. 2018. A new species and observations on the genus Ramularia from Iran. EuropeanJournal of Plant Pathology 150(4): 847–852. Quaedvlieg, W., Verkley, G.J.M., Shin, H-D., Barreto, R.W., Algenas, A.C., Swart, W.J., Groenewald, J.Z. & Crous, P.W. 2013. Sizing up Septoria. Studies in Mycology 75: 307–390. Quaedvlieg, W., Binder, M., Groenewald, J.Z., Summerell, B.A., Carnegie, A.J., Burgess, T.I. & Crous, P.W.2014. Introducing the consolidated species concept to resolve species in the Teratosphaeriaceae. Persoonia 33: 1–40.
Rayner, R.W. 1970. A mycological color chart. CMI and British Mycological Society, Kew, Surrey, England.
Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61(3): 539–542.
Rossman, A.Y., Crous, P.W., Hyde, K.D., Hawksworth, D.L., Aptroot, A., Bezerra, J.L., Bhat, J.D., Boehm, E., Braun, U., Boonmee, S. & Camporesi, E. 2015. Recommended names for pleomorphic genera in Dothideomycetes. IMA Fungus 6: 507–523.
Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis Ver. 6.0. Molecular Biology and Evolution 30(12): 2725–2729.
Unger, F. 1833. Die Exantheme der Pflanzen und einige mit diesen verwandte Krankheiten der Gewächse. Gerold, Wien.
Verkley, G.J.M., Crous, P.W., Groenewald, J.Z., Braun, U. & Aptroot, A. 2004. Mycosphaerella punctiformis revisited: morphology, phylogeny, and epitypification of the type species of the genus Mycosphaerella (Dothideales, Ascomycota). Mycological Research 108: 1271–1282.
Verkley, G.J.M., Quaedvlieg, W., Shin, H-D. & Crous, P.W. 2013. A new approach to species delimitation in Septoria. Studies in Mycology 75: 213–305. Videira, S.I.R., Groenewald, J.Z., Kolecka, A., van Haren, L., Boekhout, T. & Crous, P.W. 2015a. Elucidating the Ramularia eucalypti species complex. Persoonia 34: 50–64.
Videira, S.I.R., Groenewald, J.Z., Verkley, G.J.M., Braun, U. & Crous, P.W. 2015b. The rise of Ramularia from the Mycosphaerella labyrinth. Fungal Biology 119: 823–843.
Videira, S.I.R., Groenewald, J.Z., Braun, U., Shin, H-D. & Crous, P.W. 2016. All that glitters is not Ramularia. Studies in Mycology 83: 49–163.
Walters, D.R., Havis, N.D. & Oxley, S.J. 2008. Ramularia collo-cygni: the biology of an emerging pathogen of barley. FEMS Microbiology Letters 279: 1–7.
Wieczorek, T.M., Jørgensen, L.N., Hansen, A.L., Munk, L. & Justesen, A.F. 2014. Early detection of sugar beet pathogen Ramularia beticola in leaf and air samples using qPCR. European Journal of Plant Pathology 138: 775–785.
Wijayawardene, N., Crous, P.W., Kirk, P.M., Hawksworth, D.L., Boonmee, S., Braun, U., Dai, D.Q., D’souza, M.J., Diederich, P., Dissanayake, A. & Doilom, M. 2014. Naming and outline of Dothideomycetes- 2014 including proposals for the protection or suppression of generic names. Fungal Diversity 69: 1–55.
Wingfield, M.J., de Beer, Z.W., Slippers, B., Wingfield, B.D., Groenewald, J.Z., Lombard, L. & Crous, P.W. 2012. One fungus, one name promotes progressive plant pathology. Molecular Plant Pathology 13(6): 604–613. | ||
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