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AN OVERVIEW OF THE PHYLOGENETIC RELATIONSHIPS OF BROMUS PUMILIO (POACEAE) AND ALLIES BASED ON nrDNA ITS AND trnL-F SEQUENCES | ||
| The Iranian Journal of Botany | ||
| مقاله 1، دوره 25، شماره 1، شهریور 2019، صفحه 1-10 اصل مقاله (1.12 M) | ||
| نوع مقاله: Research Paper | ||
| شناسه دیجیتال (DOI): 10.22092/ijb.2019.119238 | ||
| نویسندگان | ||
| Zahra Pourmoshir1؛ Atefe Amirahmadi* 2؛ Reza Naderi1 | ||
| 1Faculty of Science and Institute of Biological Science, Damghan University, Damghan, Iran. | ||
| 2School of Biology and Institute of Biological Science | ||
| چکیده | ||
| According to various taxonomic treatments, Bromus has been divided into 8 to 9 sections, subgenera or even separate genera. The relationship of Bromus pumilio (syn.: Boissiera squarrosa) with other species of Bromus has long been a matter of dispute. To clarify this problem, the nuclear ribosomal DNA ITS and chloroplast DNA trnL-F sequences for 31 and 28 species respectively were used to reconstruct the phylogenetic relationship and reveal the infrageneric boundaries. Molecular analysis performed by Maximum Parsimony analyses and Bayesian method. The results based on nrDNA ITS show that sects. Bromus, Ceratochloa, Genea, Mexibromus and Neobromus are monophyletic, while the plastid data doesn’t support the monophyly of any sections in the genus Bromus.Evidence based on the nrDNA ITS data doesn’t show any close relationships between B. pumilio (sect. Boissiera) and B. danthoniae or B. lanceolatus (sect. Bromus) and instead robustly supports B. pumilio as the sister group of B. gracillimus (sect. Nevskiella), while in the plastid data B. pumilio is the sister group of a clade comprising B. inermis (sect. Pnigma), B. gunckelii (sect. Neobromus)and species of sect. Ceratochloa. | ||
| کلیدواژهها | ||
| Bromus pumilio؛ Boissiera؛ phylogeny؛ flora of Iran؛ Poaceae | ||
| عنوان مقاله [English] | ||
| بررسی اجمالی روابط فیلوژنتیکی Bromus pumilio (Poaceae) و خویشاوندان براساس توالیهای nrDNA ITS و trnL-F | ||
| نویسندگان [English] | ||
| زهرا پورمشیر1؛ عاطفه امیراحمدی2؛ رضا نادری1 | ||
| 1فارغ التحصیل کارشناسی ارشد، گرایش سیستماتیک-بومشناسی، دانشگاه دامغان | ||
| 2دانشکده زیست شناسی و پژوهشکده علوم زیستی، دانشگاه دامغان | ||
| چکیده [English] | ||
| برپایه مطالعات تاکسونومیک متعدد جنس Bromus به 8 تا 9 بخش، زیرجنس و یا جنسهای مجزا تقسیمبندی میشود. مدت مدیدی است که رابطه بین گونهBromus pumilio (syn: Boissiera squarrosa) با گونههای دیگر جنس Bromus موضوع بحث است. جهت بازسازی روابط فیلوژنی و آشکارسازی مرزهای درون جنسی از 31 توالی ریبوزومی هستهای ITS و 28 توالی کلروپلاستی trnL-F استفاده شد. تحلیلهای مولکولی بهوسیله روش پارسیمونی و بایسین اجرا شد. نتایج برپایه توالی ITS هستهای ریبوزومی نشان میدهد که بخشهای Bromus، Ceratochloea، Genea، Mexibromus و Neobromus تکنیا هستند در حالیکه دادههای کلروپلاستی تکنیا بودن هیچ یک از بخشهای جنس Bromus را نشان نمیدهد. شواهد بر پایه دادههای ریبوزومی ITS هیچ رابطه نزدیکی بین گونه B. pumilio (sect. Boissiera) با گونههای B. danthoniae یا B. lanceolatus (sect. Bromus) نشان نمیدهد و بهجایآن گونه B. pumilio را با حمایت بالا بهعنوان گروه خواهری B. gracillimus (sect. Nevskiella) در نظر میگیرد، همچنین در دادههای کلروپلاستی گونه B. pumilio گروه خواهری کلادی متشکل از B. inermis (sect. Pnigma)، B. gunckelii (sect. Neobromus) و گونههای بخش Ceratochloa است. | ||
| کلیدواژهها [English] | ||
| Bromus pumilio, Boissiera, phylogeny, flora of Iran, Poaceae | ||
| مراجع | ||
|
Ainouche, M. L. & Bayer, R. J. 1997: On the origins of the tetraploid Bromus species (section Bromus, Poaceae): insights from internal transcribed spacer sequences of nuclear ribosomal DNA. –Genome 40: 730–743. Armstrong, K. C. 1991: Chromosome evolution of Bromus. In: Tsuchiya, T. & Gupta, P. K. (Eds.), Chromosome engineering in plants,Part B. pp. 363–377. Elsevier Science Publishers. –Amsterdam.
Briggs, B. G., Marchant, A. D., Gilmore, S. & Porter, C. L. 2000: A molecular phylogeny of Restionaceae and allies. In: Wilson, K. L. & Morrison, D. (Eds.), Monocots-Systematics and Evolution. pp. 661–671. CSIRO publishing. –Melbourne.
Bor, N. L. 1970: Bromeae. In: Rechinger, K. H. (Ed.), Flora Iranica no. 70: 105–141. Akademische Druck- u. Verlagsanstalt. –Graz.
Calonje, M., Martín-Bravo, S., Dobeš, C., Gong, W., Jordon-Thaden, I., Kiefer, C., Kiefer, M., Paule, J., Schmickl, R. & Koch, M. A. 2009: Non-coding nuclear DNA markers in phylogenetic reconstruction. –Plant Syst. Evol. 282: 257–280.
Edgar, R. C. 2004: Muscle: multiple sequence alignment with high accuracy and high throughput. –Nucleic Acids Res. 32: 1792–1797.
Felsenstein, J. 1985: Confidence limits on phylogenies: an approach using the bootstrap. –Evolution 38: 783–791.
Fortune, P. M., Pourtau, N., Viron, N. & Ainouche, M. L. 2008: Molecular phylogeny and reticulate origins of the polyploidy Bromus species from section Genea (Poaceae). –Am. J. Bot. 95: 456–464.
Hackel, E. 1885: Boissiera pumilio. In: Stapf, O. (Ed.), Die botanischen ergebnisse Polakschen expedition nach Persian im jahre 1882 no. 50: 9. Denkschriften der Kaiserlichen Akademie der Wissenschaften. –Wien.
Kellogg, E. A. 2015: Flowering plants, Monocots, Poaceae. In: Kubitzki, K. (Ed.), The families and genera of vascular plants no. 13: 416. Springer. –London.
Naderi, R. & Rahiminejad, M. R. 2015: A taxonomic revision of the genus Bromus (Poaceae) and a new key to the tribe Bromeae in Iran. –Ann. Bot. Fenn. 52: 233–248.
Naderi, R., Rahiminejad, M. R., Assadi, M. & Vitek, E. 2016: A new taxonomic concept for Bromus danthoniae including comments on Bromus sectt. Bromus and Triniusia (Poaceae). –Ann. Nat. Hist. Mus. Wien Ser B Bot. 118: 167–180.
Nevski, S. A. 1934: Schedae ad Herbarium Florae Asiae Mediae ab Universitate Asiae Mediae editum no. 17: 30. Acta Universitatis Asiae Mediae, ser. 8b, Botanica. –Taschkent.
Nylander, J. A. A. 2004: MrModeltest. Version 2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala.
Oja, T. & Jaaska, V. 1998: Allozyme diversity and phylogenetic relationships among diploid annual bromes (Bromus, Poaceae). –Ann. Bot. Fenn. 35: 123–130.
Oja, T. 2006: Phylogenetic relationships and systematics in genus Bromus (Poaceae). In: Sharma, A. K. & Sharma. A. (Eds.), Plant genome, biodiversity and evolution Vol. 1, Part D: Phanerogams (Gymnosperm) and (Angiosperm-Monocotyledons). 231–253. Science Publishers. –USA.
Page, D. M. 2001: Treeview (Win32). Version 1. 6. 6. Available from http://taxonomy. zoology. gla. ac. uk/rod/treeview. html
Pillay, M. & Hilu, K. W. 1995: Chloroplast-DNA restriction site analysis in the genus Bromus (Poaceae). –Am. J. Bot. 82: 239–249.
Posada, D. & Buckley, T. R. 2004: Model selection and model averaging in phylogenetics: advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests. –Syst. Biol. 53: 793–808.
Pourmoshir, Z., Amirahmadi, A. & Naderi, R. 2017: Cladistic analysis of the tribe Bromeae (Poaceae) based on morphological characters in Iran. –Taxonomy and Biosystematics 9: 1–14.
Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A. & Huelsenbeck, J. P. 2012: MrBayes 3. 2: efficient bayesian phylogenetic inference and model choice across a large model space. –Syst. Biol. 61: 539–542.
Saarela, J. M., Peterson, P. M. & Valdés-Reyna, J. 2014: A taxonomic revision of Bromus (Poaceae: Pooideae: Bromeae) in México and Central America. –Phytotaxa 185: 1–147.
Saarela, J. M., Peterson, P. M., Keane, R. M., Cayouette, J. & Graham, S. W. 2007: Molecular phylogenetics of Bromus (Poaceae: Pooideae) based on chloroplast and nuclear DNA sequence data. –Aliso 23: 450–467.
Scholz, H. 1981: Der Bromus-pectinatus-Komplex (Gramineae) im Nahen und Mittleren Osten. –Botanische Jahrbücher für Systematik, Pflanzengeschichte und Pflanzengeographie 102: 471-495.
Scholz, H. 1998: Notes on Bromus danthoniae and relatives (Gramineae). –Willdenowia 28: 143–150.
Sang, T., Crawford, D. J., Stuessy, T. 1995: Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implication for biogeography and concerted evolution. –Proc. Natl. Acad. Sci. USA92: 6813–6817.
Smith, P. M. 1969: Serological relationships of Bromus L. and Boissiera Hochst. ex Steud. –Feddes Repert. 79: 337–345.
Smith, P. M. 1972: Serology and species relationships in annual bromes (Bromus L. sect. Bromus). –Ann. Bot. 36: 1–30.
Smith, P. M. 1985: Observations on Turkish brome-grasses. I. Some new taxa, new combinations and notes on typification. –Notes Roy. Bot. Gard. Edinburgh 42: 491–501.
Solander, D. C. 1794: Pappaphorum squarrosum. In: Russell, A. & Russell, P. (Eds.), The natural history of Aleppo containing a description of the city, and the principal natural productions in its neighbourhood no. 2: 244. Printed for G. G. and J. Robinson –London.
Soreng, R. J., Peterson, P. M., Romaschenko, K., Davidse, G., Zuloaga, F. O., Judziewicz, E. J., Filgueiras, T. S., Davis, J. I. & Morrone, O. 2015: A worldwide phylogenetic classification of the Poaceae (Gramineae). –J. Syst. Evol. 53: 117–137.
Stebbins, G. L. 1981: Chromosome and evolution in the genus Bromus (Gramineae). –Bot. Jahrb. Syst. 102: 359–379.
Steudel, E. G. 1854–1855: Synopsis plantarum glumacearum. J. B. Metzler –Stuttgartiae
Swofford, D. L. 2002: PAUP* Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Inc –Sunderland.
Taberlet, P., Gielly, L., Pautou, G., Bouvet, J. 1991: Universal Primers for amplification of three non-coding regions of chloroplast DNA. –Plant Mol. Biol. 17: 1105–1109.
Trinius, C. B. 1830: Graminum genera quaedam speciesque complures definitionibus novis illustravit. –Mém. Acad. Imp. Sci. St. Pétersbourg Hist. Acad. 1: 54–93.
Tzvelev, N. N. 1976: Grasses of the Soviet Union. Nauka. –Leningrad. [In Russian]
Wagnon, H. K. 1952: A revision of the genus Bromus, section Bromopsis, of North America. –Brittonia 7: 415–480.
White, T. J., Bruns, T., Lee, S. &Taylor, J. 1990: Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis D. H. (Ed.), PCR protocols: a guide to methods and applications pp. 315–322. Academic Press. –San Diego.
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