BIOGEOGRAPHIC RECONSTRUCTION OF THE GENUS FERULA INFERRED FROM ANALYSES OF nrDNA AND cpDNA SEQUENCES

Ali, S. Sh., Yu, Y., Pfosser, M. and Wetsching, W. 2012: Inferences of biogeographical histories within subfamily Hyacinthoideae using S-DIVA and Bayesian binary MCMC analysis implemented in RASP (Reconstruct Ancestral State in Phylogenies). –Ann. Bot. 109: 95-107.

Banasiak, L., Piwczynski, M., Ulinski, T., Downie, S. R., Watson, M. F., Shakya, B. and Spalik, K. 2013: Dispersal patterns in space and time: a case study of Apiaceae subfamily Apioideae. -J. Biogeogr. 40 (7): 1324-1335.

Banasiak, Ł., Wojewódzka, A., Baczyński, J., Reduron, J. P., Piwczyński, M., Kurzyna-Młynik, R., Gutaker, R., Czarnocka-Cieciura, A., Kosmala-Grzechnik, S. and Spalik, K. 2016: Phylogeny of Apiaceae subtribe Daucinae and the taxonomic delineation of its genera. –Taxon. 65: 563–585.

Boissier, P. E. 1867: Flora Orientalis. - H. Georg, Basel & Geneva, Switzerland.

Brown, R. P. and Yang, Z. 2010: Bayesian dating of shallow phylogenies with a relaxed clock. –Syst. Biol. 59 (2): 119-131.

Buerki, S., Forest, F., Alvarez, N., Nylander, J. A. A., Arrigo, N. and Sanmartin, I. 2011: An evaluation of new parsimony-based versus parametric inference methods in biogeography: a case study using the globally distributed plant family Sapindaceae. –J. Biogeogr. 38 (3): 531-550.

Calviño, C. I., Martínez, S. G. and Downie, S. R. 2008: Morphology and biogeography of Apiaceae subfamily Saniculoideae as inferred by phylogenetic analysis of molecular data. –Am. J. Bot. 95 (2): 196-214.

Calviño, C. I., Tilney, P. M., Van Wyk, B. E. and Downie, S. R. 2006: A molecular phylogenetic study of southern African Apiaceae. –Am. J. Bot. 93 (12): 1828–1847.

Cannon, J. F. M. 1968: Ferula L. – In: Tutin, T. G., Heywood, V. H., Burges, N. A., Valentine, D. H., Walters, S. M. and Webb, D. A., eds. Flora Europaea, Vol. 2: 358-359. -Cambridge University Press, Cambridge.

Chamberlain, D. F. and Rechinger, K. H. 1987: Ferula L., In: Hedge, I. C., Lamond, J. M. and Rechinger, K. H., eds. Umbelliferae, Flora Iranica, Vol. 162: 387-426. -Graz: Akademische Druck-und Verlagsanstalt.

Chandler, G. T. and Plunkett, G. M. 2004: Evolution in Apiales: nuclear and chloroplast markers together in (almost) perfect harmony. –Bot. J. Linn. Soc. 144: 123–147.

Davis, S. D., Heywood, V. H. and Hamilton, A. C. 1994: Centers of plant diversity. A guide and strategy for their conservation. -IUCN Publications Unit, Cambridge, UK.

Djamali, M., Brewer, S., Breckel, S. W. and Jackson, S. T. 2012: Climatic determinism in phytogeographic regionalization: A test from the Irano-Turanian region, SW and Central Asia. -Flora, 207: 237-249.

Downie, S. R., Plunkett, G. M., Watson, M. F., Spalik, K., Katz-Downie, D. S., Valiejo-Roman, C. M., Terentieva, E. I., Troitsky, A. V., Lee, B. Y., Lahham, J. and El-OQlah, A. 2001: Tribes and clades within Apiaceae subfamily Apioideae: The contribution of molecular data. –Edinb. J. Bot. 58 (2): 301-330.

Drummond, A. J., Ho, S. Y. W., Phillips, M. J. and Rambaut, A. 2006: Relaxed phylogenetics and dating with confidence. -PLOS Biol. 4 (5), e88: 0699-0710.

Drummond, A. J. and Rambaut, A. 2007: Beast: Bayesian evolutionary analysis by sampling trees. -BMC Evol. Biol. 7: 214.

Favre, A., Päckert, M., Pauls, S. U., Jähnig, S. C., Uhl, D., Michalak, I. and Muellner-Riehl, A. N. 2015: The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas. -Biol. Rev. 90: 236-253.

Guo, Z. T., Peng, S. Z. and Hao, Q. Z. 2004: Late Miocene-Pliocene development of Asian aridification as recorded in an eolian sequence in northern China. -Glob. Planet. Change, 41: 135–145.

Jolivet, L., Augier, R., Robin, C., Suc, J. P. and Rouchy, J. M. 2006: Lithospheric-scale geodynamic context of the Messinian salinity crisis. Sediment. Geol. 188-189: 9-33.

Kadereit, J. W., Repplinger, M., Schmalz, N., Uhink, CH. and Wörz, A. 2008: The phylogeny and biogeography of Apiaceae subf. Saniculoideae tribe Saniculeae: from south to north and south again. -Taxon, 57 (2): 365-382.

Korovin, E. P. 1940: Differentsiruyuschchaya rol uslovii suschchestvovaniya v evolutsii rasteniy. Rod Ferula L., In: Keller, B. A., ed. Rasteniye i sreda. Izdat. 237-274. -Akademii Nauk SSSR., Moskva.

Korovin, E. P. 1947: Generis Ferula (Tourn.) L. Monographia illustrata. -Tashkent: Academiae Scientiarum UzRSS.

Kurzyna-Młynik, R., Oskolski, A. A., Downie, S. R., Kopacz, R., Wojewódzka, A. and Spalik, K. 2008: Phylogenetic position of the genus Ferula (Apiaceae) and its placement in tribe Scandiceae as inferred from nrDNA ITS sequence variation. -Pl. Syst. Evol. 274: 47-66.

Li, Q. Q., Zhuo, S. D., He, X. J., Yu, Y., Zhang, Y. C., and Wei, X. Q. 2010: Phylogeny and biogeography of Allium (Amaryllidaceae: Allieae) based on nuclear ribosomal internal transcribed spacer and chloroplast rps16 sequences, focusing on the inclusion of species endemic to China. -Ann. Bot. 106: 709-733.

Liao, C., Downie, S. R., Li, Q., Yu, Y., He, X. and Zhou, B. 2013: New insights into the phylogeny of Angelica and its allies (Apiaceae) with emphasis on East Asian species, inferred from nrDNA, cpDNA and morphological evidence. -Syst. Bot. 38 (1): 266-281.

Lamm, K. S. and Redelings, B. D. 2009: Reconstructing ancestral ranges in historical biogeography: properties and prospects. -J. Syst. Evol. 47 (5): 369-382.

Maddison, W. P. and Maddison, D. R. 2017: Mesquite: A modular system for evolutionary analysis. Version 3. 2. Available at: http://mesquiteproject. org.

Madjnoonian, H. 1999: A synopsis of the vegetation of Iran. In: Frey, W. and Probst, W. (eds.), Phytogeography of Iran (In Persian). pp: 23-56. -Department of the Environment I. R. Iran.

Matzke, N. J. 2014: Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. –Syst. Biol. 63: 951-970.

Médail, F., and Diadema, K. 2009: Glacial refugia influence plant diversity patterns in the Mediterranean Basin. -J. Biogeogr. 36 (7): 1333-1345.

Nylander, J. A. A., Olsson, U., Alström, P. and Sanmartín, I. 2008: Accounting for phylogenetic uncertainty in biogeography: A bayesian approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus). -Syst. Biol. 57 (2): 257-268.

Panahi, M., Banasiak, Ł., Piwczyński, M., Puchałka, R., Oskolski, A. A., and Spalik, K. 2015: Phylogenetic relationships among Dorema, Ferula and Leutea (Apiaceae, Scandiceae, Ferulinae) inferred from nrDNA ITS and cpDNA noncoding sequences. –Taxon, 64:770–83.

Panahi, M., Banasiak, Ł., Piwczyński, M., Puchałka, R., Kanani, M. R., Oskolski, A. A., Modnicki, D., Miłobedzka, A. and Spalik, K. 2018: Taxonomy of a traditional medicinal plant genus Ferula (Apiaceae) is confounded by incongruence between nuclear rDNA and plastid DNA. -Bot. J. Linn. Soc. 188: 1-17.

Pérez-Collazos, E., and Catalán, P. 2007: Genetic diversity analysis and conservation implications for the Iberian threatened populations of the Irano-Turanian relict Krascheninnikovia ceratoides (Chenopodiaceae). –Biol. J. Linn. Soc. 92: 419-429.

Pérez-Collazos, E., Sanchez-Gómez, P., Jiménez, J. F. and Catalán, P. 2009: The phylogeographical history of the Iberian steppe plant Ferula loscosii(Apiaceae): a test of the abundant-center hypothesis. -Mol. Ecol. 18: 848-861.

Pimenov, M. G., and Leonov, M. V. 1993: The genera of the Umbelliferae. -Royal Botanic Gardens, Kew.

Pleines, T., Jakob, S. S. and Blattner, F. R. 2009: Application of non-coding DNA regions in intraspecific analyses. -Pl. Syst. Evol. 282: 281-294.

Plunkett, G. M., Soltis, D. E. and Soltis, P. S. 1996: Evolutionary patterns in Apiaceae: Inferences based on matK sequence data. –Syst. Bot. 21 (4): 477- 495.

Rambaut, A., Drummond, A. J., Xie, D., Baele, G., and Suchard, M. A. 2018: Posterior summarization in bayesian phylogenetics using Tracer 1. 7. -Syst. Biol. 67 (5): 901-904.

Riddle, B. R., Dawson, M. N., Hadly, E. A., Hafner, D. J., Hickerson, M. J., Mantooth, S. J. and Yoder, A. D. 2008: The role of molecular genetics in sculpting the future of integrative biogeography. –Prog. Phys. Geogr. 32 (2): 173-202.

Rögl, F. 1999: Mediterranean and Paratethys. Facts and hypotheses of an Oligocene to Miocene paleogeography (short overview). –Geol. Carpath. 50 (4): 339-349.

Ronquist, F. and Huelsenbeck, J. P. 2003: MrBayes 3: Bayesian phylogenetic inference under mixed models. -Bioinformatics, 19: 1572-1574.

Sang, T., Crawford, D. J., Kim, S. C. and Stuessy, T. F. 1994: Radiation of the endemic genus Dendroseris(Asteraceae) on the Jaun Fernandez Islands: evidence from sequences of the ITS regions of nuclear ribosomal DNA. –Am. J. Bot. 81: 1494-1501.

Sanmartin, I. 2012: Historical biogeography: Evolution in time and space. –Evo Edu Outreach, 5: 555-568.

She, M., Pu, F., Pan, Z., Watson, M. F., Cannon, J. F. M., Holmes-Smith, I., Kljuykov, E. V., Phillippe, L. R. and Pimenov, M. G. 2005: Apiaceae (Umbelliferae). In: Flora of China Editorial Committee, ed. Flora of China, Vol. 14: 1-250. -St. Louis: Missouri Botanical Garden.

Spalik, K., Piwczynski, M., Danderson, C. A., Kurzyna-Mlynik, R., Bone, T. S., and Downie, S. R. 2010: Amphitropic amphiantarctic disjunctions in Apiaceae subfamily Apioideae. –J. Biogeogr. 37: 1977-1994.

Suchard, M. A., Lemey, P., Baele, G., Ayres, D. L., Drummond, A. J. and Rambaut, A. 2018: Bayesian phylogenetic and phylodynamic data integration using BEAST 1. 10. -Virus Evolution, 4 (1): vey016.

Takhtajan, A. 1986: Floristic regions of the world. -University of California Press, Berkeley, CA.

Thorne, J. L., Kishino, H., and Painter, I. S. 1998: Estimating the rate of evolution of the rate of molecular evolution. –Mol. Biol. Evol. 15 (12): 1647- 1657.

Wang, Q. Z., He, X. J., Zhou, S. D., Wu, Y. K., Yu, Y. and Pang, Y. L. 2008: Phylogenetic inference of the genus Bupleurum (Apiaceae) in Hengduan Mountains based on chromosome counts and nuclear ribosomal DNA ITS sequences. –J. Syst. Evol. 46 (2): 142-154.

Weir, J. T. and Schluter, D. 2008: Calibrating the avian molecular clock. –Mol. Ecol. 17: 2321-2328.

Wen, J., Lowry, II. P. P., Walck, J. L. and Yoo, K. O. 2002: Phylogenetic and biogeographic diversification in Osmorhiza (Apiaceae). –Ann. Missouri Bot. Gard. 89: 414-428.

Wen, J., Zhang, J. Q., Nie, Z. L., Zhong, Y. and Sun, H. 2014: Evolutionary of diversifications of plants on the Qinghai-Tibetan Plateau. -Frontiers in Genetics, 5: 1-16.

White, F., and Léonard, J. 1991: Phytogeographical links between Africa and Southwest Asia. -Flora et Vegetatio Mundi, 9: 229-246.

Willis, K. J. 1996: Where did all the flowers go? The fate of temperate European flora during glacial periods. -Endeavour, 20: 110-114.

Yang, Z. 2006: Computational molecular evolution. Pp: 107-108. -Oxford University Press, New York.

Yu, Y., Harris, A. J. and He, X. J. 2010: S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories. –Mol. Phylogenetics Evol. 56: 848-850.

Yu, Y., Harris, A. J., Blair, C. and He, X. 2015: RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography. –Mol. Phylogenetics Evol. 87: 46-49. Available at http://mnh. scu. edu. cn/soft/blog/RASP

Zhang, G., Basharat, U., Matzke, N. and Franz, N. M. 2017: Model selection in statistical historical biogeography of Neotropical insects__ The Exophthalmus genus complex (Curculionidae: Entiminae). –Mol. Phylogenetics Evol. 109: 226-239.

Zohary, M. 1973: Geobotanical foundations of the Middle East. 2 vols. -Fisher, Stuttgart.